Microbial Community Ecology

Event Date: 
Wed, 2011-06-01 09:00 - Fri, 2011-06-03 18:30

Christopher Quince:
Extracting ecological signal from noise: an introduction to tools for the analysis of high throughput sequencing data from microbial communities

PROGRAMME
Wednesday 1st June
10:00 - 12:00 Introduction to Linux (J. Lagnel)

Thursday 2nd June
10:00 – 11:00 Introduction and initial computer set-up
11:00 – 12:00 Noise removal from Pyrosequenced Amplicons
12:00 – 13:00 Lunch
13:00 – 14:00 OTU construction, total diversities and sampling efforts
14:00 – 15:00 AmpliconNoise tutorial
15:00 – 15:30 Coffee
15:30 – 16:30 Taxonomic classification of reads
16:30 – 17:30 Megan tutorial

Friday 3rd June
9:00 – 9:30 A short introduction to Mothur
9:30 – 10:30 The Qiime pipeline for analysing microbial communities
10:30 – 11:00 Coffee
11:00 – 12:00 Qiime tutorial
12:00 – 13:00 Lunch
13:00 – 14:00 Multivariate statistics for microbial communities
14:00 – 15:00 Multivariate statistics tutorial
15:00 – 15:30 Coffee
15:30 – 17:00 Tutorial general

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