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Type of Publication: Book Chapter

Pafilis, E, Brown NP, Horn H
Submitted
Pafilis E, Brown NP, Horn H. Automated Annotation of Scientific Documents: Increasing Access to Biological Knowledge. In: Elloumi M, editor. Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data. Wiley; Submitted.
Wiley
Book Chapter

Type of Publication: Journal Article

Pafilis, E, Frankhild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Leary P, Hammock J, Schulz K et al.
2015
Pafilis E, Frankhild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, et al. ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinformatics. 2015.
10.1093/bioinformatics/btv045
Journal Article
Papanikolaou, N, Pafilis E, Nikolaou S, Ouzounis CA, Iliopoulos I, Promponas VJ
2011
Papanikolaou N, Pafilis E, Nikolaou S, Ouzounis CA, Iliopoulos I, Promponas VJ. BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinformatics. 2011;27(23):3327-8.
27
3327 - 3328
10.1093/bioinformatics/btr564
Journal Article
O’Donoghue, SI, Horn H, Pafilis E, Haag S, Kuhn M, Satagopam VP, Schneider R, Jensen LJ
2010
O’Donoghue SI, Horn H, Pafilis E, Haag S, Kuhn M, Satagopam VP, et al. Reflect: A practical approach to web semantics. Web Semantics: Science, Services and Agents on the World Wide Web. 2010;8(2-3):182-9.
8
182 - 189
10.1016/j.websem.2010.03.003
Journal Article
Katayama, T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun H-W, Aerts J et al.
2010
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, et al. The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics. 2010;1(1):8.
1
8
10.1186/2041-1480-1-8
Journal Article
Pafilis, E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, Schneider R
2009
Pafilis E, O'Donoghue SI, Jensen LJ, Horn H, Kuhn M, Brown NP, et al. Reflect: augmented browsing for the life scientist. Nature Biotechnology. 2009;27(6):508-10.
27
508 - 510
10.1038/nbt0609-508
Journal Article
Pavlopoulos, GA, Pafilis E, Kuhn M, Hooper SD, Schneider R
2009
Pavlopoulos GA, Pafilis E, Kuhn M, Hooper SD, Schneider R. OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics. 2009;25(7):977-8.
25
977 - 978
10.1093/bioinformatics/btp081
Journal Article
Stockinger, H, Attwood T, Chohan SN, Cote R, Cudre-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E et al.
2008
Stockinger H, Attwood T, Chohan SN, Cote R, Cudre-Mauroux P, Falquet L, et al. Experience using web services for biological sequence analysis. Briefings in Bioinformatics. 2008;9(6):493-505.
9
493 - 505
10.1093/bib/bbn029
Journal Article
Pavlopoulos, GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R
2008
Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. Arena3D: visualization of biological networks in 3D. BMC Systems Biology. 2008;2(1):104.
2
104
10.1186/1752-0509-2-104
Journal Article

Type of Publication: Thesis

Pafilis, E
2009
Pafilis E. Web-based data integration and text mining techniques to accelerate biomedical research (PhD). Heidelberg: EMBL (European Molecular Biology Laboratory) – University of Heidelberg (joint PhD); 2009.
Heidelberg
EMBL (European Molecular Biology Laboratory) – University of Heidelberg (joint PhD)
Thesis
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