Karakassis, I, Papadopoulou K-N, Dafnomili E, Plaiti W, Wilkinson M.  1993.  Preliminary study of the environmental conditions of Iraklion Harbour. 4th Pan-Hellenic Symposium Oceanography and Fisheries. :397-400.

Karakassis, I, Smith C, Papadopoulou K-N, Tsapakis E, Xatziyanni E, Maidanou M, Frentzos A, White P, Kourakis S, Katranidis S.  1996.  Aquaculture & Environment: a research project of the 2nd Operational Program of Greece, General Secretariat of Research & Technology. Fisheries News. 178:36-41.

Wambeke, FV, Christaki U, Psara S, Bianchi AM, Ignatiades L, Tselepides A, Dafnomili E.  1996.  Phytoplankton-Bacteria Relationships in the Cretan Sea during March and September 1995. 2nd Workshop of the Mediterranean Targeted project (MTP).

Mylonas, CC, Woods III LC, Zohar Y.  1997.  Cyto-histological examination of post-vitellogenesis and final oocyte maturation in captive-reared striped bass. Journal of Fish Biology. 50(1):34-49. Abstract

Chatzifotis, S, Takeuchi T, Watanabe T, Satoh S.  1997.  The Effect of Dietary Carnitine Supplementation on Growth of Rainbow Trout Fingerlings. Fisheries Science. 63(2):321-322.

Mylonas, CC, Woods III LC, Thomas P, Zohar Y.  1998.  Endocrine profiles of female-striped bass (Morone saxatilis) in captivity, during postvitellogenesis and induction of final oocyte maturation via controlled-release GnRHa-delivery systems. General and Comparative Endocrinology. 110(3):276-289. Abstract

Mylonas, CC, Zohar Y, Woods III LC, Thomas P, Schulz RW.  1998.  Hormone profiles of captive striped bass Morone saxatilis during spermiation, and long-term enhancement of milt production. Journal of the World Aquaculture Society. 29(4):379-392. Abstract

Lampadariou, N, Karakassis I, Chapdelaine L, Wilkinson MF, Dafnomili E.  2000.  Spatial variability in water column and sediment chemistry in Heraklion harbour (Crete, E. Mediterranean. Fresenius Envir Bull. 9:164-171.

Athanasso Poulou, F, Cotou E, Watsos I, Giagnisi M.  2000.  Study of the bacteriostatic activity of an Artemia enrichment compound based on plant extracts from Angelica sp. Bulletin of the Hellenic Veterinary Medical Society. 51(4):293-296.

Lampadariou, N, Karakassis I, Chapdelaine L, Wilkinson MF, Dafnomili E.  2000.  Spatial variability in water column and sediment chemistry in Heraklion harbour (Crete, E. Mediterranean). Fresenius Environmental Bulletin. 9(3-4):164-171. Abstract

Wilkes, D, Xie SQ, Stickland NC, Alami-Durante H, Kentouri M, Sterioti A, Koumoundouros G, Fauconneau B, Goldspink G.  2001.  Temperature and myogenic factor transcript levels during early development determines muscle growth potential in rainbow trout (Oncorhynchus mykiss) and sea bass (Dicentrarchus labrax). Journal of Experimental Biology. 204(16):2763-2771. Abstract

Wilson, AJ, McDonald G, Moghadam HK, Herbinger CM, Ferguson MM.  2003.  Marker-assisted estimation of quantitative genetic parameters in rainbow trout, Oncorhynchus mykiss. Genetical Research. 81(2):145-156. Abstract

Hunt, E, Pafilis E, Tulloch I, Wilson J.  2004.  Index-Driven XML Data Integration to Support Functional Genomics. International Workshop on Data Integration in Life Sciences, DILS'04. LNCS 2994:95-109.

Magoulas, A.  2004.  Mitochondrial DNA. Stock Ιdentification Μethods . :311-330.

Hunt, E, Pafilis E, Tulloch I, Wilson J.  2004.  Index-Driven XML data integration to support functional genomics. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2994:95-109. Abstract

Darby, AC, Lagnel J, Matthew CZ, Bourtzis K, Maudlin I, Welburn SC.  2005.  Extrachromosomal DNA of the symbiont Sodalis glossinidius. Journal of Bacteriology. 187(14):5003-5007. Abstract

Duron, O, Lagnel J, Raymond M, Bourtzis K, Fort P, Weill M.  2005.  Transposable element polymorphism of Wolbachia in the mosquito Culex pipiens: Evidence of genetic diversity, superinfection and recombination. Molecular Ecology. 14(5):1561-1573. Abstract

Duron, O, Lagnel J, Raymond M, Bourtzis K, Fort P, Weill M.  2005.  Transposable element polymorphism of Wolbachia in the mosquito Culex pipiens: evidence of genetic diversity, superinfection and recombination. Molecular Ecology. 14:1561-1573. Abstract

Darby, AC, Lagnel J, Matthew CZ, Bourtzis K, Maudlin I, Welburn SC.  2005.  Extrachromosomal DNA of the symbiont Sodalis glossinidius. Journal of Bacteriology. 187:5003-5007. Abstract

Volckaert, FA, Batargias C, Bonhomme F, Canario AVM, Chistiakov DA, Choudhuri JV, Galibert F, Georgoudis A, Haley CS, Hellemans B et al..  2007.  Genomic resources for the aquaculture of European sea bass. Aquaculture. 272:S316-S317.

Kochzius, M, Kappel K, Dobitz L, Silkenbeumer N, Nolte M, Weber H, Hjorleifsdottir S, Marteinsson V, Hreggvidsson G, Planes S et al..  2007.  The "Fish & Chips" project: Microarrays as a tool for the identification of marine organisms in biodiversity and ecosystem research. Oceans 2007 - Europe. 1-3:1190-1193. Abstract

Arvanitidis, C, Somerfield PJ, Rumohr H, Faulwetter S, Valavanis V, Vasileiadou A, Chatzigeorgiou G, Vanden Berghe E, Vanaverbeke J, Labrune C et al..  2007.  The Biological Geography of the European Seas: results from the macrofaunal inventory of the soft-substrate communities. 9th International Polychaete Conference.

Gharbi, K, Murray BW, Moghadam HK, Ferguson MM, Wright PA, Danzmann RG.  2007.  Genome organization of glutamine synthetase genes in Rainbow trout (Oncorhynchus mykiss). CYTOGENETIC AND GENOME RESEARCH . 116:113-115.

Kochzius, M, Kappel K, Döbitz L, Silkenbeumer N, Nölte M, Weber H, Hjörleifsdottir S, Marteinsson V, Hreggvidsson G, Planes S et al..  2007.  The "fish & chips" project: Microarrays as a tool for the identification of marine organisms in biodiversity and ecosystem research. OCEANS 2007 - Europe. Abstract

Gharbi, K, Murray BW, Moghadam HK, Ferguson MM, Wright PA, Danzmann RG.  2007.  Genome organization of glutamine synthetase genes in rainbow trout (Oncorhynchus mykiss). Cytogenetic and Genome Research. 116(1-2):113-115. Abstract

Gontikaki, E, Mayor DJ, Polymenakou PN, Witte U.  2008.  Deep-sea benthic community response to a simulated sedimentation event in two contrasting sites. 1st National Mikrobiokosmos Conference.

Kochzius, M, Nölte M, Weber H, Silkenbeumer N, Hjörleifsdottir S, Hreggvidsson GO, Marteinsson VP, Kappel K, Planes S, Tinti F et al..  2008.  DNA Microarrays for Identifying Fishes. Marine Biotechnology. 10:207-217. Abstract

Arvanitidis, C, Somerfield PJ, Rumohr H, Faulwetter S, Valavanis V, Vasileiadou A, Chatzigeorgiou G, Vanden Berghe E, Vanaverbeke J, Labrune C et al..  2008.  Marine biodiversity patterns in European Seas. International Conference on Marine Data and Information Systems.

Petalidis, LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP.  2008.  Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Molecular Cancer Therapeutics. 7(5):1013-1024.

Petalidis, LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP.  2008.  Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Molecular Cancer Therapeutics. 7(5):1013-1024. Abstract

Somerfield, PJ, Arvanitidis C, Faulwetter S, Chatzigeorgiou G, Vasileiadou A, Amouroux J-M, Anisimova N, Cochrane SJ, Craeymeersch J, Dahle S et al..  2009.  Assessing evidence for random assembly of marine benthic communities from regional species pools. Marine Ecology Progress Series. 382:279-286.

Arvanitidis, C, Somerfield PJ, Rumohr H, Faulwetter S, Valavanis V, Vasileiadou A, Chatzigeorgiou G, Vanden Berghe E, Vanaverbeke J, Labrune C et al..  2009.  Biological geography of the European seas: results from the MacroBen database. Marine Ecology Progress Series. 382:265-278.

Vanden Berghe, E, Claus S, Appeltans W, Faulwetter S, Arvanitidis C, Somerfield PJ, Aleffi I, Amouroux J-M, Anisimova N, Bachelet G et al..  2009.  MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe. Marine Ecology Progress Series. 382:225-238.

Heip, C, Hummel H, Van Avesaath P, Appeltans W, Arvanitidis C, Aspden R, Austen M, Boero F, Bouma TJ, Boxshall G et al..  2009.  Marine Biodiversity and Ecosystem Functioning. :100.

Heip C, Hummel H, van Avesaath P, Appeltans W, Arvanitidis C, Aspden R, Austen M, Boero F, Bouma TJ, Boxshall G et al..  2009.  Marine Biodiversity and Ecosystem Functioning. Printbase, Dublin, Ireland, 100 p., ISSN 2009-2539. Printbase, Dublin, Ireland. :100.

Aubin, J, Papatryphon E, van der Werf HMG, Chatzifotis S.  2009.  Assessment of the environmental impact of carnivorous finfish production systems using life cycle assessment. Journal of Cleaner Production. 17(3):354-361. Abstract

Grémare, A, Labrune C, Vanden Berghe E, Amouroux JM, Bachelet G, Zettler ML, Vanaverbeke J, Fleischer D, Bigot L, Maire O et al..  2009.  Comparison of the performances of two biotic indices based on the MacroBen database. Marine Ecology Progress Series. 382:297-311. Abstract

Renaud, PE, WEBB TJ, BjØrgesaeter A, Karakassis I, Kȩdra M, Kendall MA, Labrune C, Lampadariou N, Somerfield PJ, Włodarska-Kowalczuk M et al..  2009.  Continental-scale patterns in benthic invertebrate diversity: Insights from the MacroBen database. Marine Ecology Progress Series. 382:239-252. Abstract

WEBB, TJ, Aleffi IF, Amouroux JM, Bachelet G, Degraer S, Dounas C, Fleischer D, Grémare A, Herrmann M, Hummel H et al..  2009.  Macroecology of the European soft sediment benthos: Insights from the MacroBen database. Marine Ecology Progress Series. 382:287-296. Abstract

Børresen, T, Dobson A, Boyen C, Ferrer M, Höfle M, Ianora A, Jaspars M, Kijjoa A, Olafsen J, Querellou J et al..  2010.   Marine Biotechnology A European Strategy for Marine Biotechnology.

Liu, XD, Liang MQ, Zhang LM, Wang JY, Chang Q, L. WJ, Kotzamanis Y.  2010.  Effects of fish protein hydrolysate levels on growth performance and biological and physiological parameters in tongue sole (Cynoglossus semilaevis Günther, 1873) post larvae. Acta Hydrobiologica Sinica. 34:1-8.

Kochzius, M, Seidel C, Antoniou A, Bolta KS, Campo D, Cariani A, Garcia Vazquez E, Hauschild J, Hervet C, Hjörleifsdottir S et al..  2010.  Identifying fishes through DNA barcodes and microarrays. PloS One . 5(9):e12620. Abstract

Oulas, A, Poirazi P.  2010.  Methods in Molecular Biology - MicroRNA and Cancer - Utilization of SSCprofiler to Predict a New miRNA Gene. 676:243-252.

Oulas, A, Karathanasis N, Poirazi P.  2010.  Methods in Molecular BiologyMicroRNA and CancerComputational Identification of miRNAs Involved in Cancer. 676:23-41.

Polymenakou, PN, Mandalakis M, Wijker R, Hofstetter T.  2010.  Microbial degradation of dinitrotoluenes (2,4- and 2,6-DNTs) by mixed soil cultures for the determination of isotopic fractionation. 3rd National Mikrobiokosmos Conference.

Katayama, T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun H-W, Aerts J et al..  2010.  The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics. 1(1):8.

Wassef, EA, Chatzifotis S, Sakr EM, Saleh NE.  2010.  Effect of two natural carotenoid sources in diets for gilthead seabream, Sparus aurata, on growth and skin coloration. Journal of Applied Aquaculture. 22(3):216-229. Abstract

Wringe, BF, Devlin RH, Ferguson MM, Moghadam HK, Sakhrani D, Danzmann RG.  2010.  Growth-related quantitative trait loci in domestic and wild rainbow trout (Oncorhynchus mykiss). BMC Genetics. 11 Abstract

Harrad, S, De Wit CA, Abdallah MA-E, Bergh C, Björklund JA, Covaci A, Darnerud PO, De Boer J, Diamond M, Huber S et al..  2010.  Indoor contamination with hexabromocyclododecanes, polybrominated diphenyl ethers, and perfluoroalkyl compounds: An important exposure pathway for people? Environmental Science and Technology. 44(9):3221-3231. Abstract

Timusk, ER, Ferguson MM, Moghadam HK, Norman J, Wilson CC, Danzmann RG.  2011.  Genome evolution in the fish family Salmonidae: Generation of a Brook charr genetic map and comparisons among chars (Arctic char and Brook char) with Rainbow trout. BMC GENETICS . 12:68.